Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_chr2_0150700

RNA Class

transcript (circRNA)

Alias

hsa_circ_0117490 hsa_circLRP1B_005

Host gene

Lrp1b

Type of circRNA

Intergenic-Intergenic

Location (GRCh37)

2:142404417-142404648 UCSC (hg19)

Location (GRCh38)

2:141646848-141647079 UCSC (hg38)

External Database

circbank

circBase

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-63.00 kcal/mol

Thermodynamic ensemble

Free Energy: -67.86 kcal/mol

Frequency: 0.0004

Diversity: 27.97

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((...(((((..(((((((.....(((....)))((.(((((((((((((((.((((.((((((((...)))))).))))))...((.((((((((.((.(((((..(................)..))))))).)))))))).)).)))).)))).))))))))).((((((.((.((((((...)))))).)).)))))))))....)))))))))....))).

Thermodynamic Ensemble Prediction

.....(((...(((((..(((((((.....(((....)))((.(((((((((((((((.,(({,((((((({...}))))).})))))...,(,((((((((.,{.(((((..(...,............)..)))))}}.)))))))}.)),)))).)))).))))))))).((((((.((.((((((...)))))).)).)))))))))}...,))))))))....))).

Basic Information

Secondary Structure

Structure Prediction

Forensic Context