Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_chr1_0857000

RNA Class

transcript (circRNA)

Alias

hsa-MACF1_0427

Host gene

MACF1

Type of circRNA

Intergenic-Intergenic

Location (GRCh37)

1:39835762-39838211 UCSC (hg19)

Location (GRCh38)

1:39370090-39372539 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-18.50 kcal/mol

Thermodynamic ensemble

Free Energy: -22.41 kcal/mol

Frequency: 0.0018

Diversity: 50.45

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((.((..((....((((((((((.(((...((((((...((((........))))...)))))).......((((.............))))......))).))).....)))))))...))..)))))...((((((........))))))

Thermodynamic Ensemble Prediction

.....,,{.,{..({....((((((({((({,....{((({{...{{{{....,,..)))),,.||||||....|||||{,.....{,,,.,.,|,......,})}))},......))))))).,.},...,})),..((((((........))))))

Basic Information

Secondary Structure

Structure Prediction

Forensic Context