Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_PLXND1_0004200

RNA Class

transcript (circRNA)

Alias

hsa-PLXND1_0023

Host gene

PLXND1

Type of circRNA

Exon-Exon

Location (GRCh37)

3:129303228-129305562 UCSC (hg19)

Location (GRCh38)

3:129584385-129586719 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-106.90 kcal/mol

Thermodynamic ensemble

Free Energy: -112.82 kcal/mol

Frequency: 0.0001

Diversity: 86.53

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((...........(((((.((((((.((((((.(((((((((.(((....(((..(((((((((....(((((((((((((......)))))).............((((.((......)).)))))))))))..)))).....))))).((((((((((((.(((((...(((((.((.(((((....)))))..)).).))))))))).)))).)))...)))))))))))..)))))))))..)))))).)).).))).))))).(((((.(........))))))..........))))

Thermodynamic Ensemble Prediction

.....((((...........(((((.(((.,({((((((,(((((((((,(({,{.,(((,.{{||||{{{,,,.(((((((((((((......))))))..{||.......,||{{,{{..,,,,)).)}))))}}}}}..||},,,,,.,|{|{{{{{{((((((((.(((((.,.{(((,.((.(((((....)))))..)).,.))))))))).)))).)))}..)))))},}))),..))))))))..)))))).))}).))).))))).(((((.,........}))))),.........))))

Basic Information

Secondary Structure

Structure Prediction

Forensic Context