Basic Information
Symbol
hsa_PVT1_0003500
RNA Class
transcript (circRNA)
Alias
hsa-PVT1_0049
Host gene
PVT1
Type of circRNA
Intron-Intron
Location (GRCh37)
8:128981346-128981740
UCSC (hg19)
Location (GRCh38)
8:127969100-127969494
UCSC (hg38)
External Database
Secondary Structure
Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-78.10 kcal/mol
Thermodynamic ensemble
Free Energy:
-85.95 kcal/mol
Frequency:
0.0000
Diversity:
135.74
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
(.((.((..(((((((...((((....(((((((((.((((.((((......))))..)).)).)).))).))))...)))))))))))..)).)).)(((.............((((((..........(((..(((.(((....))).)))..)))....(((....)))........))))))..............((((((.(......(((((((..(((...(((.......(((..(((...........)))..)))......)))))))))))))......))))))).....((((..((((((((....((((....((((...((....))....))))..))))...((((...))))))))))))...)))).....)))
Thermodynamic Ensemble Prediction
{.((.((,,(((((((...({{(.,.,(((({(({,.{(((.((({....,.|}}},.}},}}.,},}}}.})}},,.}})))}}||}}..,,.,}..|||,.,..,,......{{((({.......,,{{{{..{||,,||.,,.}}}.},},.}}}....((({...,||{||.....,,,}},.}}}}}.....}},|(((((,{......{((((((..,(({..{(,.......(((..(((...........)))..)))......,|||||}|}|}}}..,,,.,}}}}},.....{((,..,,,{||||...,||||....{{({,.,||....)),}},}}})..)))).,.{{{{...})))}))))))),,.}}))}}.,,.}}
Forensic Context
No forensic context available.