Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_RAPGEF6_0003500

RNA Class

transcript (circRNA)

Alias

hsa-RAPGEF6_0075

Host gene

RAPGEF6

Type of circRNA

Exon-Exon

Location (GRCh37)

5:130775274-130846184 UCSC (hg19)

Location (GRCh38)

5:131439581-131510491 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-52.10 kcal/mol

Thermodynamic ensemble

Free Energy: -54.78 kcal/mol

Frequency: 0.0128

Diversity: 37.48

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((.((((...(.(((((((((((..((((((.(((((.....))))).))))))....((((((...(((...((((((((.((......)).........................................................................((.(((((((........))))))))).))))))))...)))..))))))))))))))))))...)))).))........

Thermodynamic Ensemble Prediction

.....((.((((...(.(((((((((((..((((((.(((((.....})))).)))))}.,,,((((((...(((...((((((((.((......)).........................................................................((.(((((((,......}))))))))).))))))))...)))..))))))))))))))))))...)))),)}........

Basic Information

Secondary Structure

Structure Prediction

Forensic Context