Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_RAPGEF6_0017800

RNA Class

transcript (circRNA)

Alias

hsa-RAPGEF6_0226

Host gene

RAPGEF6

Type of circRNA

Exon-Exon

Location (GRCh37)

5:130834136-130843900 UCSC (hg19)

Location (GRCh38)

5:131498443-131508207 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-64.50 kcal/mol

Thermodynamic ensemble

Free Energy: -70.32 kcal/mol

Frequency: 0.0001

Diversity: 85.01

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((.((((.(((((((.((((.((((((...((((((.((((....)))).)))))).......((((((.((.(............).))))))))...(((((.((((.......((.((((((((....)))))))).)))))))))))((((((.......)))))).(((..(((((..........)))))..))).......)))))).........)))).))))))).)))).))((.((.((.((((...((......))...)))).)).)).))

Thermodynamic Ensemble Prediction

.....((.((((.(((((((.((({.((((((.,.,(((((.((((....)))).)))))|.,,....{{((((((,.,.,,.,,,,.,.,}|}|}},)))|,,(((((.(((({......{{.{{{{{{{|..,,)))))))).}))))))))))....,,..,,,...,{{{{.,{(,.{((((..........)))))..})),.},...)))))).........}))).))))))).)))).}}({.((.((.((((...((......))...)))).)).)).))

Basic Information

Secondary Structure

Structure Prediction

Forensic Context