Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_RAPGEF6_0019500

RNA Class

transcript (circRNA)

Alias

hsa-RAPGEF6_0194

Host gene

RAPGEF6

Type of circRNA

Intron-Exon-Intron

Location (GRCh37)

5:130841910-130883883 UCSC (hg19)

Location (GRCh38)

5:131506217-131548190 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-52.50 kcal/mol

Thermodynamic ensemble

Free Energy: -57.31 kcal/mol

Frequency: 0.0004

Diversity: 50.99

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((((((..((((((.((......((((.((((((..((((.....(.((.(((((.............))))).)).)........)))))))))).....................(((.((((.....))))))).(((.(((((........))))).)))..)))).......)).))))))....)).)))))).

Thermodynamic Ensemble Prediction

.....((((((({{((((((..(((((((...((..(((.(((.((((,.....})))))))..)))..)}...}}}))))).,},.}))}...((((((({,,,,.....,,,....{((...(((.((((.....))))})).))).{((((........)))))))))))),,.....||,{|,|,}}}},},,)),}))))).

Basic Information

Secondary Structure

Structure Prediction

Forensic Context