Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_RAPGEF6_0021900

RNA Class

transcript (circRNA)

Alias

hsa-RAPGEF6_0131

Host gene

RAPGEF6

Type of circRNA

Intron-Exon-Intron

Location (GRCh37)

5:130883740-130955866 UCSC (hg19)

Location (GRCh38)

5:131548047-131620173 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-23.73 kcal/mol

Thermodynamic ensemble

Free Energy: -27.61 kcal/mol

Frequency: 0.0018

Diversity: 28.79

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((.....((((...(((....)))...))))..(((..(.....)..)))...................(((........))).....((((........................................................)))).........(((((......)))))...............(((.(((....((((.((((.......)))).))))....))).)))))))

Thermodynamic Ensemble Prediction

.....((({.....{(((...(((....)))...)))}..{((..(.....}..))}...........,{{....,||,.......,|,}..,,.((({........................................................))))..,......(((((,....,)))))..............||({.(((....((((.((((.......)))).))))....))).)))))))

Basic Information

Secondary Structure

Structure Prediction

Forensic Context