Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_chr1_0871800

RNA Class

transcript (circRNA)

Alias

hsa_circ_0113364 hsa_circSCMH1_001

Host gene

Scmh1

Type of circRNA

Intergenic-Intergenic

Location (GRCh37)

1:41635298-41635636 UCSC (hg19)

Location (GRCh38)

1:41169626-41169964 UCSC (hg38)

External Database

circbank

circBase

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-103.60 kcal/mol

Thermodynamic ensemble

Free Energy: -109.61 kcal/mol

Frequency: 0.0001

Diversity: 88.19

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((((((....(((....((((................))))...)))..))))))))((((((((((((((.((((.....(((((...)))))......(((((((........)))))))((((((.((((((....(((((.((((..(((((((((((....))))........))).)))))))).)))))..)))))).))))))...(((((......((((((....(((....((((((.((((........)))).)))))))))((((.....)))))))))).....))))).)))).)))))))......)))))))..

Thermodynamic Ensemble Prediction

{{...,||(((((...,,,.....{({(..,,{....,,,.},,)))}{{{||},{||}}}},}{{{{{{{(((((((.((((.....{((({...))))}......(((((((........)))))))((((((.((((((....(((((.((((..{((((((((((....))))........))).)))))))).))))),.)))))).)))))),{((((((.,....{{{{{,...,{({,,,,((({{{,|{{{..,,,,,,)))|,||||||,,.{{{{.....}))))))))}.....}})))})))).))))))),,,}.))))))))}}

Basic Information

Secondary Structure

Structure Prediction

Forensic Context