Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_SCMH1_0006200

RNA Class

transcript (circRNA)

Alias

hsa-SCMH1_0136

Host gene

SCMH1

Type of circRNA

Exon-Exon

Location (GRCh37)

1:41536267-41541109 UCSC (hg19)

Location (GRCh38)

1:41070595-41075437 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-55.80 kcal/mol

Thermodynamic ensemble

Free Energy: -59.53 kcal/mol

Frequency: 0.0024

Diversity: 25.92

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((...(((((.....((((.((.(((.......))).)).)))).((((........(((((((((..........((((((((((((.........(((((..((.((....((....))....))))..)))))...))).)))))))))..)))))))))))))...(((((.......))))).....((((.....)))))))))..))

Thermodynamic Ensemble Prediction

.....{{...(((((...,.((((.((.(((.,....,))).)).)))).|,,........((((((((((..........((((((((((((.,.......(((((..,,.(((,..((....))..,.))))..)))))..,))).}))))))))..))))))))))}}}...(((((.......))))).....((((.....)))))))))..})

Basic Information

Secondary Structure

Structure Prediction

Forensic Context