Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_SLC8A1_0024900

RNA Class

transcript (circRNA)

Alias

hsa-SLC8A1_0118

Host gene

SLC8A1

Type of circRNA

Exon-Exon

Location (GRCh37)

2:40656236-40656476 UCSC (hg19)

Location (GRCh38)

2:40429096-40429336 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-45.10 kcal/mol

Thermodynamic ensemble

Free Energy: -49.43 kcal/mol

Frequency: 0.0009

Diversity: 42.83

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((((.((....(((((((((((...(((((((((((.((..(((.(((......)))..)))..............(((((((.....)))).)))......)))))))).)))))((.((......))...))........((......))..))))))).........))))..)).)))))).......(.((((((((((..(((.......))))))))).)))).)..

Thermodynamic Ensemble Prediction

.....((((((.((....(((((((((((...((((({((((({((..(({.{{{..,,..}}),.}}}.............,(((((((.....)))).)))..,,...,}))))),,)))),..{{......||.,.||...,..,.||..,...))}.))))))).........))))..)).)))))).......(.((((((((((..(((.......))))))))).)))).}..

Basic Information

Secondary Structure

Structure Prediction

Forensic Context