Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_SLC8A1_0009400

RNA Class

transcript (circRNA)

Alias

hsa-SLC8A1_0211

Host gene

SLC8A1

Type of circRNA

Intron-Exon

Location (GRCh37)

2:40476070-40657441 UCSC (hg19)

Location (GRCh38)

2:40248930-40430301 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-29.90 kcal/mol

Thermodynamic ensemble

Free Energy: -32.38 kcal/mol

Frequency: 0.0179

Diversity: 24.54

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

........((((((......((((.(((((((((.((((..((((((((....)))...)))))..))))..)))))))...))...))))................))))))..((.(((((((................))))))).))

Thermodynamic Ensemble Prediction

.....{{{(,,(({,.....{({{.{{(((((((.((((..((((((({....}))...)))))..))))..)))))))...})..,)))).,.,...,,....,,,)}))))..((.(((((((................))))))).))

Basic Information

Secondary Structure

Structure Prediction

Forensic Context