Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_TCF25_0002200

RNA Class

transcript (circRNA)

Alias

hsa_circ_0041079 hsa_circTCF25_007 hsa-TCF25_0001

Host gene

TCF25

Type of circRNA

Exon-Exon

Location (GRCh37)

16:89949759-89954125 UCSC (hg19)

Location (GRCh38)

16:89883351-89887717 UCSC (hg38)

External Database

circbank

circBase

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-108.50 kcal/mol

Thermodynamic ensemble

Free Energy: -115.46 kcal/mol

Frequency: 0.0000

Diversity: 121.30

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(.(((.(..((((.(((((..((((((.....))))))....(((((((.....))...)))))(((..((((((((((.((.......(((((..(((((....))).(((.(((...(((.((.......)))))......))).)))...(((......))).....))..)))))........................................(((((..((((((....................)))).))(((((....)))))...........((((((((........)))))))))))))(((.((((((.(.((........)).).)))))).)))...........(((........))).....)).))))))))))..))).))))).)))).)))).)

Thermodynamic Ensemble Prediction

.....,.(((.(..((((.(((((..((((((.....))))))....(((((,{,,...,}.,,)))))(((..((((((((({.,{...,,..{(((({,{{(((....))).,,{.{{....{((.((,......}}}||...{,{((({|{{{{.{{,.,||,.|||..,,,}}...{|||.,.....................................,{||||..{{{(((,....|.............})})),}}{((((....)))))}}}}}...}},|||{{|||...,.,,,))))))})}))))(((.((((((.(.({........)).).)))))).))).,,|||,..,,|||........}}}...,})).})))))))))..))).))))).)))).)))).}

Basic Information

Secondary Structure

Structure Prediction

Forensic Context