Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_TLK1_0017200

RNA Class

transcript (circRNA)

Alias

hsa-TLK1_0099

Host gene

TLK1

Type of circRNA

Intron-Intron

Location (GRCh37)

2:172006708-172006942 UCSC (hg19)

Location (GRCh38)

2:171150198-171150432 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-33.90 kcal/mol

Thermodynamic ensemble

Free Energy: -39.10 kcal/mol

Frequency: 0.0002

Diversity: 57.47

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((..((((...(((((((((((..((.((((((((..((.(((((...........)))))))..)))).................((((((.....)))))).((((..((((.(((((....))))).))))..))))....(((((....)))))...((((((((((((........)))))...))))))).......)))))).)))))))))))..)))).))

Thermodynamic Ensemble Prediction

.....((..((((...(((((((((((..((.((({.,,,..,,,(((((..,........)))}}},..,,,,.......,,,{....{{((((((.....))))}}}|||,..{|||,{{(((....}}}}}.}}}}..}}||.,,,{((({....)))}},,.(((((((,,{{{.,......,})))...))))))),,,....)))))).)))))))))))..)))).))

Basic Information

Secondary Structure

Structure Prediction

Forensic Context