Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_UBAP2_0003200

RNA Class

transcript (circRNA)

Alias

hsa-UBAP2_0218

Host gene

UBAP2

Type of circRNA

Intron-Exon-Intron

Location (GRCh37)

9:33932560-33933669 UCSC (hg19)

Location (GRCh38)

9:33932562-33933671 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-44.60 kcal/mol

Thermodynamic ensemble

Free Energy: -48.23 kcal/mol

Frequency: 0.0028

Diversity: 47.64

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((((..(((......)))......)))))))..(((((...((((....(((.........))).....))))..)))))..((((..(((.........(((...)))...((((.(((....((((((....)))).))...)))..))))............)))..))))...(((((.........))))).......((((....))))..(((.....))).............

Thermodynamic Ensemble Prediction

.....(((((((..(((......)))......)))))))..(((((...((((...,(((.........)}),,...))))..)))))..,(((..,(({........|||...}}}...((((.(({.,..((((((....)))).))..,)))..))))............||}..|}}|...(((({.........})))}}},....{(((....))))..{{(.....)))...,,........

Basic Information

Secondary Structure

Structure Prediction

Forensic Context