Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_XPO1_0013000

RNA Class

transcript (circRNA)

Alias

hsa-XPO1_0210

Host gene

XPO1

Type of circRNA

Exon-Exon

Location (GRCh37)

2:61719460-61725927 UCSC (hg19)

Location (GRCh38)

2:61492325-61498792 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-35.10 kcal/mol

Thermodynamic ensemble

Free Energy: -40.96 kcal/mol

Frequency: 0.0001

Diversity: 45.15

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((((....(((.(((((((((..(((...((.(((((((((...(.((((..(((((((....))((.(((......))).))...((((((((......))))))))...)))))..)))).)..))))))))).))..(((((..(((......)))..))))))))..)))))))))..))).....)).))))......

Thermodynamic Ensemble Prediction

.....((((((....(((.((((({(((..(((...((.(((((((((.,{({,.,,},||,{{((....|},,|||||,,,,,{,,{,,.,,,.{,.(((((,....})))))....,))))..))))}},,))))))))).))..{((((..(((......)))..))))))))..)))})))))..))).....)),,))}......

Basic Information

Secondary Structure

Structure Prediction

Forensic Context