Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_ZEB1_0000900

RNA Class

transcript (circRNA)

Alias

hsa-ZEB1_0234

Host gene

ZEB1

Type of circRNA

Exon-Exon

Location (GRCh37)

10:31609507-31750166 UCSC (hg19)

Location (GRCh38)

10:31320578-31461237 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-66.90 kcal/mol

Thermodynamic ensemble

Free Energy: -73.67 kcal/mol

Frequency: 0.0000

Diversity: 54.61

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((..(.(((.(((.(((((.(((((((((..............(((.....(((........))).....)))(((((((......)).))))).((((((...))))))))).))))))......((((((((((((..........((((.((((.....))))......((((((.((((((.(........).))))))))))))))))((((..((((...((...))...))))....)))))))..)))))))))))))).)))((((((.....((.........))....))))))))).)..))...

Thermodynamic Ensemble Prediction

.....|,{,(.(((((((.(((((.(((((((({..............(((.....(((........))).....)))(((((((......)}.})))).((((({...})))))))).))))))......((((((((((((.,.......,||,..{(((.....)))}......((((((.((((({.{........}.))))))))))))|}},((((,.((((.,.((...))...))))....)))))))}.}))))))))))))).))}((((((.....{,.........))....))))))))).),.))...

Basic Information

Secondary Structure

Structure Prediction

Forensic Context