Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_ZZZ3_0002900

RNA Class

transcript (circRNA)

Alias

hsa_circ_0012981 hsa_circZZZ3_021 hsa-ZZZ3_0019

Host gene

ZZZ3

Type of circRNA

Exon-Exon

Location (GRCh37)

1:78041753-78045313 UCSC (hg19)

Location (GRCh38)

1:77576068-77579628 UCSC (hg38)

External Database

circbank

circBase

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-65.10 kcal/mol

Thermodynamic ensemble

Free Energy: -71.82 kcal/mol

Frequency: 0.0000

Diversity: 90.78

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((((...((((((.(((..........))).).))))).........((((((...((.((((..(((((...((((((..(.........)..))))))......((((....)))))))))...)))).))...)))))).)))))))....((.......))........................((((((((((.((((.............(((((..((...))..))))).........((((((......))))))....(((((..((((((..(((((........)))))...))))))..))).))....))))))))))))))......

Thermodynamic Ensemble Prediction

.....(((((({...((((((.(((..........))).),,))))....,,...(((({(...,{.||||..|{{|..,.((((((.,{.........}..)))))).|||||((((....)))}))},,..,|||,.,,..,)))))).}))))))....({.......,,........................((((((((({,((((......,......{{{{(..{(,,,||,,|||}},....,,,,((((((......)))))).....||||..{,{||{||||||{||}|....,})}}}}}}}}}}...},,})).},.))))))))))))))......

Basic Information

Secondary Structure

Structure Prediction

Forensic Context