Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ABCC1_0006000

Sequence Length

320 nt

GC Content

0.5375

GAUGCCCAGGUGGACCUGUUUCGUGACAUCACUUUCUACGUCUACUUUUCCCUCUUACUCAUUCAGCUCGUCUUGUCCUGUUUCUCAGAUCGCUCACCCCUGUUCUCGGAAACCAUCCACGACCCUAAUCCCUGCCCAGAGUCCAGCGCUUCCUUCCUGUCGAGGAUCACCUUCUGGUGGAUCACAGGGUUGAUUGUCCGGGGCUACCGCCAGCCCCUGGAGGGCAGUGACCUCUGGUCCUUAAACAAGGAGGACACGUCGGAACAAGUCGUGCCUGUUUUGGUAAAGAACUGGAAGAAGGAAUGCGCCAAGACUAGGAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-90.8 kcal/mol

Ensemble Metrics

Free Energy: -96.72

Frequency: 0.0001

Diversity: 110.29

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(...((((((((.......(((....))).......))))))))...).))((.............(((.((....((((((.(((.((........)).))).))))))....)).)))............((..((((..(((((((((((((((.((...(((((....))))).))))))((((.(((((((((((((......))))))....)))))))))))((((((.(((...((((((((.((((.(.......).))))))).)))))...))).)))))).))))))).))))...)))).))))

Thermodynamic Ensemble Prediction

(({(.,{(((,,,,|}}}....|,|.},,),){{{{{{.||||,,|{{{{{.||(({({.,..{(({.((,(((({{{.((((((.(((.,(,.......,),))).))))))....,,{||{{{{.,,,,....{{{{({{{..({{,,((((({.,,,.|||||{{{{{,,,,)))))}),.,||||||}{{(((((((((((......)))))).,,,)))}))}|}}}|}}}{({(({...,,,}))))}}|||,|}},,}}}).)).)}}))..},))),}})).,,)))})),||,..,,,)}.})))))))))