Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_AMOTL1_0003200

Sequence Length

527 nt

GC Content

0.5465

CCGCCCAUGCCAACUUCCGUUCCCAUCAACCAUGCAGCAGCACAGCCCCAUGUCCUCCCAGACCUCUUCCGCCAGCGGGCCACUGCACUCUGUCUCCCUGCCGCUUCCACUCCCGAUGGCCCUGGGUGCUCCACAGCCCCCGCCUGCCGCCUCCCCCAGCCAGCAGCUUGGUCCAGAUGCCUUUGCGAUUGUGGAGCGAGCCCAGCAAAUGGUGGAGAUAUUAACAGAGGAGAACCGGGUGCUUCACCAGGAACUUCAGGGUUACUACGACAAUGCCGACAAGCUCCACAAGUUUGAAAAAGAACUUCAGAGAAUUUCGGAAGCCUAUGAAAGUCUGGUCAAGUCUACCACCAAGCGAGAAUCGCUGGACAAGGCCAUGAGAAACAAAUUGGAAGGCGAGAUUAGAAGACUUCAUGAUUUCAACAGAGACCUCCGAGAUCGACUAGAGACUGCUAACAGGCAACUAUCCAGCAGGGAAUACGAAGGGCAUGAAGACAAAGCUGCAGAGGGGCAUUAUGCUUCCCAGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-141.4 kcal/mol

Ensemble Metrics

Free Energy: -151.57

Frequency: 0.0000

Diversity: 176.38

Structure Visualization

Structure Prediction

MFE Structure Prediction

......(((..(((....)))..)))......((.((((.....(((((..(((......))).......(((....)))..(((((((.(((((.(.((((.((((...((((..(((....(((.(((....))).)))(((((....((((.(((....((.(((((.((((.((((....)))..).)))).)))))...))...))).))))....((((...((((..((.((((...)))).))..))))...))))...........((((....(((...((((((......))))))..)))....))))......(((((..(((((((..((((.((((((.((((...))))))).....................))).))))..)))))))....)))))((((((.............))))))...(((......))).)))))......)))...))))....)))))))).).))))).)).))))).)))))....))))...))..

Thermodynamic Ensemble Prediction

..,,..(((,.{{(....}}}..},,......{(.{(({,....{({{(,,(((......}}}.....,.({{..,}))}..{{(((((.(((((.(.((((.((((...((((.{(((({,{(((,(((,,.,||}.}}|{{,{|,.{{((({.(((,,..{{.(((((.((((.{,{(....))).,).)))).)))))...)}...}||,||||.,.....{,,.(({{..{{.((((,,.}|||,|}..}|||{{({(|............((((.,..(((...((((((......))))))..)))..,.)))).,}}}}.||,,.,|||}||,,,||||.}}||||{((((...)))))}}....))))}},.,........|}},}}}}|,||{{{{|,,.,|}}.}||||||....,.,..}},.))}}}},.,,.}},.,{{{{...,))),....,},}},,))))....)))))))).).})))}.}).))))).)))))....}))}...,,..