Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ANKS1A_0010000

Sequence Length

494 nt

GC Content

0.5547

AAAUCUACGGAGCACAUGAAGAAGAUCCCCACCAUCAUCCUGUCCAUCACAUACAAAGGUGUCAAGUUCAUCGAUGCCUCCAACAAGAACGUCAUUGCAGAGCACGAGAUCCGGAACAUUUCCUGUGCGGCCCAGGACCCGGAGGACCUCUGUACCUUUGCCUACAUCACCAAGGACCUGCAGACCAGCCACCACUAUUGCCAUGUGUUCAGCACCGUGGAUGUGAACCUGACCUACGAGAUCAUCCUGACGCUGGGGCAGGCCUUCGAAGUGGCCUAUCAGUUGGCCCUGCAGGCCCAGAAGUCCAGGGCGACGGGCGCCUCUGCAGCUGAGAUGAUUGAAACAAAAUCUUCCAAACCGGUGCCUAAGCCUCGGGUCGGCGUGAGGAAAUCCGCACUGGAACCACCUGAUAUGGACCAAGAUGCCCAAUCCCAUGCCAGUGUCUCCUGGGUUGUGGACCCCAAACCAGACUCUAAGCGGAGCCUCAGCACCAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-133.6 kcal/mol

Ensemble Metrics

Free Energy: -144.89

Frequency: 0.0000

Diversity: 202.87

Structure Visualization

Structure Prediction

MFE Structure Prediction

...(((..((((((((((((...((....((((.......(((.....)))......))))))...))))).).)).))))....))).......(((.((((.(((((((.((......(((...(((((((((((((((..((((.((((.....................((.(((((((.((((((((.......(((.(((..(((((..((.(((((.....((........))..)))))))..))))).)))))).......)))))........)))..))))))))))))).)))).((((...(((((((........((.((.((((.......)))).))))....)))))))..))))))))))((((((.(((.....(((((((..(((.......))).)).)).)))....)))))))))........)))))))))))).......)).)).)))...))..).))).)))....

Thermodynamic Ensemble Prediction

...,{,..(((((((((({.{,.{,,...,,,{.,,.,,.{(,.....||,.....,||||{{..,|||.|{|,|||||,|....,,,...,,.}||,,|||||||}|},,.{{{....})}}}}}||{{{{|||{{{{(({.(({{.({((,,,{{,,{...........,}||.((((({{.{{(((,.,,,{....{{{,||||||{{{{..||,||||(,,...{{........}}.,)))}}}}..)}))}|||||||{......},)))},....|}})),,)))))))|}},},.))}).||||...{((((((.,,,..,.|{|((,{{((.......}))),)},...,.))))))}..))))))))}}((((((.(({.....((({(((..{((.......|)}.}},.}.})}....))))))))),)}),})})||||||,|{|..,|,...,,,},|||,..,,))}}})})})).}}..