Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_APP_0006400

Sequence Length

234 nt

GC Content

0.5385

GUCAUGAGAGAAUGGGAAGAGGCAGAACGUCAAGCAAAGAACUUGCCUAAAGCUGAUAAGAAGGCAGUUAUCCAGCAUUUCCAGGAGAAAGUGGAAUCUUUGGAACAGGAAGCAGCCAACGAGAGACAGCAGCUGGUGGAGACACACAUGGCCAGAGUGGAAGCCAUGCUCAAUGACCGCCGCCGCCUGGCCCUGGAGAACUACAUCACCGCUCUGCAGGCUGUUCCUCCUCGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-64.7 kcal/mol

Ensemble Metrics

Free Energy: -69.83

Frequency: 0.0002

Diversity: 50.3

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((......))))...((((.................((((.((((.............)))))))).(((((...(((((........)))))...)))))..(((((.(((((.........(((.(((.(((((((.....((.((((((.((((..(((((.....)))...))..)))))))))).)).....))...)))))))))))..))))))))))))))..

Thermodynamic Ensemble Prediction

.((((......))))...((((........,..,,....{,{||||{{...,((,.,.|..,}})}})).|{{||,..(((((........))))}.,.)))))..((({{{(((((....,,,{.{{(.{(,{((((,,(.....((.((((((.((((..(((((.....)))...))..)))))))))).)).....}}.},))))}))))))..))))))))))))))..