Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATXN10_0010800

Sequence Length

298 nt

GC Content

0.5101

CUCUUCAAUCUUUCUGUGACAAAUGACUAGAAUUCUGGAGCCUGCACCUUCAUUUUAGGCAGCUAUUGCUUCAGAAGUCACAGUCUGUUCCACCAGCCUUUGCCAAGGAUGCAGGUGCCACAGCAUCUCAAGAGAAGUCACCAAUCACACAGCUCCAUGCUGAGGCCCUCUUGCCUGCUACUGAGGAGCUCUUGCCACCCCCGAUUCCUGCCUUUCCCCAGUGAUGCAGGACAGGUAAAUGAGCUGGAUGGUAUCCCGUUGAUCCUGGACAACUGCAACAUCAGUGACAGUAACCCCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-75.8 kcal/mol

Ensemble Metrics

Free Energy: -80.59

Frequency: 0.0004

Diversity: 103.57

Structure Visualization

Structure Prediction

MFE Structure Prediction

....(((((....(((((((............(((((((((..((.(((.......)))..))....))))))))))))))))......(((((((((((((((..((((((.(......).))))))((((((..(((..........((((.....)))).))).))))))((((((((((.(((((....................))...))).)))))..)))))...)))))).).))))).)))......)))))....((...((((..((....))..))))....)).

Thermodynamic Ensemble Prediction

....{{{,,....,(((((,...,{{{{....(((((((((,,((,(((.,,,,,,,|||{||,..,|}}}||||,,}},,}}}}}}..,||{{|||,,{||||.}||}}|,}||}||..,,)|,})}|,||||.,||},....,}}},((((.....)))){{{{......)))),,...|}|||{{{|,,,||,.........((((((.{{,,....,.)).)))))}..)))))}.),)))||,|}|....,.}})}),.,.({...((((..((....))..))))....)}.