Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CCDC66_0004900

Sequence Length

270 nt

GC Content

0.3630

GUCAAUAUAGUCUAUAUUUAAACAGUAUUUCUAAUCAGCCAAAGGAUGAGAACAUUAUGGGAUUAUUCAAAAAAACUGAAAUGGUUUCAUCUGUCCCAGCUGAAAAUAAAUCUGUCUUAAAUGAACAUCAGGAGACAUCUAAACAGUGUGAGCAAAAAAUUGCCAUAGAGAAUGAAUGGAAACCAGCUGAUAUAUUCAGUACUCUGGGGGAAAGGGAAUGUGAUAGAAGUUCGUUGGAAGCAAAAAAAGCCCAGUGGAGGAAAGAGCUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-44.6 kcal/mol

Ensemble Metrics

Free Energy: -50.84

Frequency: 0.0000

Diversity: 65.2

Structure Visualization

Structure Prediction

MFE Structure Prediction

.......((((((.(((((((((((.((((....(((((....((((((((.((((.(((...............))).)))).))))))))......)))))....)))))))).))))))).......(((....)))...(..((((.((((....))))))))..)......(((...)))(((((.....))))).(.(((((....((.((((.........)))).))..............))))).)......))).))).

Thermodynamic Ensemble Prediction

.....,,(({{{{,|||{{{{{(((.{(((,,..(((((....((((((((.((((.(((..{{........,..))}.)))).))))))))......)))))....}}}}}}||,||}}}||,...,},,||,,||||,...{..((((.((({....})))))))..}...,..|{{...))}(((((.....))))).({(({{(....||.{{{{.,.......}}}}.}|,...,|........)))}},)},},..},,}))}.