Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CCDC66_0005900

Sequence Length

609 nt

GC Content

0.3908

AGAGAAUGAAUGGAAACCAGCUGAUAUAUUCAGUACUCUGGGGGAAAGGGAAUGUGAUAGAAGUUCGUUGGAAGCAAAAAAAGCCCAGUGGAGGAAAGAGCUAGAUGAACAGGUUGCUUUAAAGAAGAAAGAAAAAGAAGUUUCUGAAAAAUGGAAUGAUCCUUGGAAAAAAUCUGAAAGUGAUAAAAUAAUAUGGGAAAAACAUCAAAUUCUUGACCAAUCUAGGGAAACAGUACUGCUGGAGCACCCUUUCAGUGCUGUGAAACAAGAACUGCAAAGAAAAUGGAUUGAAGAGUUGAAUAAGCAAAUAGAAGAUGACCGUCAAAGAAAAAUAGAGGAAAAAAUUAUAUAUUCAAAGGGUGAGGAACAUGACAGAUGGGCAAUGCACUUUGAUUCAUUAAAGAGUUAUCCUGGUUCUCAAUCUCAGCUGUUCUCUCAGUCAACACACAAACAACCUGAGUACUUCUGUGUCUCUCCUGACACUCAGGAGCUGGCUGAUGUCAGCAGUGUUUGUACACCUACAACCGGAAGCCAGGUUGAACCUUCAGAGGAGGAGCAUAUAGCAAAACCUAUUAAGGAUGUGGUUAUGGCAAACAGUAAGAAAACAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-124.7 kcal/mol

Ensemble Metrics

Free Energy: -137.26

Frequency: 0.0000

Diversity: 163.75

Structure Visualization

Structure Prediction

MFE Structure Prediction

..........(((...)))(((((.....))))).(((((((((..(((...((((.........((((((..((.......))))))))((((.((.(((((((((((((((...((((((.(((...(((((......)))))..............(((((..........(((..((.((.......(((..(.......((((.(((((...(((((((.....(((((((((..((.....))...)))))))))......................)))))))))))))))).....)..)))....)).))..)))..........))))).............((((((.((...(..(((.....)))..)...)).))))))))).))))))......))).))))...)))).)))).)).))))........)))).....)))((((((....))).)))((((((...))))))((((((....)))))).((((....))))...(((((........)))))..))))))))).....((.((((((....(((....))).....))))))))..................

Thermodynamic Ensemble Prediction

..........(((...)))(((((.....))))).(((((((((...{{(,.{.,.,,.,,.|||{,{({{..((.......})))}|||{(((.{{.(((((((((({((((,,(((((,,.{{,...{{,,,......|}})}.......|||....{(((({{{.....||,{{,.,{|{{.........,,........,|||..|||{{...{{,|||||},..(((((((((..((.....}),..)))))))))....,.....,{....,}....|}||||||}|}||||,....,}........,||.,|{.||...........}}}},.....,,......{(((((.(({..(..(((.....)))..)..,}).))))))}}}.}},,})}}},,.)))}}))),..)))).)))).))}}))),,,,....,.....|||||||,{.,||||||}||},,((((({...))))))((((((....)))))).((((....))))...{{{{|||,,,}},)))))..))))))))).....((.((((((....(((....))).,...))))))))......,.......,...