Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0007100

Sequence Length

360 nt

GC Content

0.4944

UUUCAACCACACCACGGGCUUUUGACCACACAAAACAGAACCAGGACUGGACCCAGUGGAACCCAAGCCAUUCAAAUCCGGAAGUGCUACUUCAGACAACCACAAGGAUGACUGAUGUAGACAGAAAUGGCACCACUGCUUAUGAAGGAAACUGGAACCCAGAAGCACACCCUCCCCUCAUUCACCAUGAGCAUCAUGAGGAAGAAGAGACCCCACAUUCUACAAGCACAAUCCAGGCAACUCCUAGUAGUACAACGGAAGAAACAGCUACCCAGAAGGAACAGUGGUUUGGCAACAGAUGGCAUGAGGGAUAUCGCCAAACACCCAAAGAAGACUCCCAUUCGACAACAGGGACAGCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-75.5 kcal/mol

Ensemble Metrics

Free Energy: -82.31

Frequency: 0.0000

Diversity: 79.39

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((............(((((....((((......(((........)))......)))).....))))).......((((...((((((((((((.((.((....)).)).))))((((((.......((((....))))...........((((...)))).........(((...((.(((..(((((...)))))..))))).))).........)))))).((.(......))).......))))))))..)))).))))(((((.(((..........((.(((((....))))).))....((((..((.................)).))))...........)))..)))))

Thermodynamic Ensemble Prediction

((((...........,(((((..,.((((......(((........)))......)))).....})))).......((((...((((((({((((.((.((....)).)).)))){(((({,,....|{{{,....||||......{{...((((...)))).,.......{{{..,((.(((..(((((...)))))..)))}}.)}).........)))))}.,,.......,||,....}},))))))))..)))}.))))(((((.{((....}|....((.(((((,,..}}|||,}|....,{{.,,||}}}},,,.,,,...,.....||||.,,,.......)))..)))))