Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0007300

Sequence Length

684 nt

GC Content

0.4839

UUUCAACCACACCACGGGCUUUUGACCACACAAAACAGAACCAGGACUGGACCCAGUGGAACCCAAGCCAUUCAAAUCCGGAAGUGCUACUUCAGACAACCACAAGGAUGACUGAUGUAGACAGAAAUGGCACCACUGCUUAUGAAGGAAACUGGAACCCAGAAGCACACCCUCCCCUCAUUCACCAUGAGCAUCAUGAGGAAGAAGAGACCCCACAUUCUACAAGCACAAUCCAGGCAACUCCUAGUAGUACAACGGAAGAAACAGCUACCCAGAAGGAACAGUGGUUUGGCAACAGAUGGCAUGAGGGAUAUCGCCAAACACCCAAAGAAGACUCCCAUUCGACAACAGGGACAGCUGCAGCCUCAGCUCAUACCAGCCAUCCAAUGCAAGGAAGGACAACACCAAGCCCAGAGGACAGUUCCUGGACUGAUUUCUUCAACCCAAUCUCACACCCCAUGGGACGAGGUCAUCAAGCAGGAAGAAGGAUGGAUAUGGACUCCAGUCAUAGUAUAACGCUUCAGCCUACUGCAAAUCCAAACACAGGUUUGGUGGAAGAUUUGGACAGGACAGGACCUCUUUCAAUGACAACGCAGCAGAGUAAUUCUCAGAGCUUCUCUACAUCACAUGAAGGCUUGGAAGAAGAUAAAGACCAUCCAACAACUUCUACUCUGACAUCAAGCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-149.5 kcal/mol

Ensemble Metrics

Free Energy: -161.17

Frequency: 0.0000

Diversity: 212.89

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((............(((((....((((......(((........)))......)))).....)))))...........))))((((...(((((((.((....)).))..((((((((.......((((.....(((((..........((((...))))))))).......(((((((((..(((((...)))))..))((((...........))))....((.(......)))...((((.(((((...............))))).....))))...((.(((((....))))).))))))))).....)))).........(((((..((((...........))))..(((((..((((.(((........((.(((.......))).)).........)))...))))....((((((...((((..((((..((((.............))))..))))..))))..))))))((((((.((...((...(((.(((..(((....((((..(((((.................))))).))))....)))..))).)))))...)))))))).........))))).(((.....)))....)))))))))))))...((((..(((((.(...........).)))))...))))...))))).....))))

Thermodynamic Ensemble Prediction

{{{{.......{{{{{(({((,,{.{{,,......{{{........}))..,,,.))))...,{|||||.{{{...{{{{,,.{(((((({((((.((.((....)).)).}}}}((((({......,(((,....||||,.,,..,,...((((...)))).,,,.....{{{..{((.(((..(((((...)))))..)))},,)}}.........)))}},.{{.,.....,||,...,|||}|||||}}..}}}}.,.....}}},}{{....))....||}||{|||,....||{{|{.,|,|||...,,,}},....,,,.........((((...........)))}..(((({..{{{|,|||.......|((.(((.......))).)).........))),..}))).,..{(((((...((((..((((..((((.............))))..))))..)))).,))))},(((({{.({...({,.{{{{.|||..|{{.,..,{||,,.{|||.|||,....{{{{{{...,))))))|||||||,},|},},}..)},..)))))))).........))))}.(((.....))),{{|}},)))}...,,...,}|||}}||||,,({{{.....,....,,},....))))}..}})},.....,}},