Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0009200

Sequence Length

363 nt

GC Content

0.4986

UCCAGGCAACUCCUAGUAGUACAACGGAAGAAACAGCUACCCAGAAGGAACAGUGGUUUGGCAACAGAUGGCAUGAGGGAUAUCGCCAAACACCCAAAGAAGACUCCCAUUCGACAACAGGGACAGCUGCAGCCUCAGCUCAUACCAGCCAUCCAAUGCAAGGAAGGACAACACCAAGCCCAGAGGACAGUUCCUGGACUGAUUUCUUCAACCCAAUCUCACACCCCAUGGGACGAGGUCAUCAAGCAGGAAGAAGGAUGGAUAUGGACUCCAGUCAUAGUAUAACGCUUCAGCCUACUGCAAAUCCAAACACAGGUUUGGUGGAAGAUUUGGACAGGACAGGACCUCUUUCAAUGACAACGC

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-75.9 kcal/mol

Ensemble Metrics

Free Energy: -83.27

Frequency: 0.0000

Diversity: 88.69

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((.(((((((.(((((...............)))))((....))....(.(((((((.......((((..((......))))))................((((...........)))).(((((......)))))........((.(((.......))).))......))))))))..))))..))))))))).((((..((((..((((.............))))..))))..))))((.(((..((((.....((((.(((....)))...))))....))))..))).))......((((((....))))))(((((((...(..(......)..).)))))))..........

Thermodynamic Ensemble Prediction

((((((.(((((((.(((((.........,.....)))))((....))....{,((((((({....{{((((.{{.(({...,,.,,.....}}}.........{(((...........)))}.{((((......))))).....,.}||}||{..,,...}},.}}......})})))),..))),.,))))))))),((((..((((..((((.............))))..))))..)))).({(((..((((,.,,.,(((,(((....))),}}.,.}..,.))))..))}.})}}....((((((....)))))){((((((,,,(..{....,,),.}.)))))))........,.