Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0009500

Sequence Length

453 nt

GC Content

0.4812

UCCAGGCAACUCCUAGUAGUACAACGGAAGAAACAGCUACCCAGAAGGAACAGUGGUUUGGCAACAGAUGGCAUGAGGGAUAUCGCCAAACACCCAAAGAAGACUCCCAUUCGACAACAGGGACAGCUGCAGCCUCAGCUCAUACCAGCCAUCCAAUGCAAGGAAGGACAACACCAAGCCCAGAGGACAGUUCCUGGACUGAUUUCUUCAACCCAAUCUCACACCCCAUGGGACGAGGUCAUCAAGCAGGAAGAAGGAUGGAUAUGGACUCCAGUCAUAGUAUAACGCUUCAGCCUACUGCAAAUCCAAACACAGGUUUGGUGGAAGAUUUGGACAGGACAGGACCUCUUUCAAUGACAACGCAGCAGAGUAAUUCUCAGAGCUUCUCUACAUCACAUGAAGGCUUGGAAGAAGAUAAAGACCAUCCAACAACUUCUACUCUGACAUCAAGCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-94 kcal/mol

Ensemble Metrics

Free Energy: -102.58

Frequency: 0.0000

Diversity: 129.45

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((((.((((((.(((((...............))))).....))))...)).)))))).....((((.((.(((((......)).................((((...........))))..(((((..((((.(((........((.(((.......))).)).........)))...))))....((((((...((((..((((..((((.............))))..))))..))))..))))))((((((.((...((...(((.(((..(((....((((..(((((.................))))).))))....)))..))).)))))...)))))))).........))))).(((.....)))((((...)))).........((((..(((((.(...........).)))))...))))..))))).)))).....

Thermodynamic Ensemble Prediction

((((((.{((((((.(((((...............)))))((....))....{,{((((((,....{{(({(.,{.{({...,,.,,.....}},.........((((...........)))}.{((((......))))}.....,.}||,||{.......}}}.}}.,....}}})))},.,))),..))})))))}.((((..((((..((((.............))))..))))..)))).,|(((..((((,.{{,,{{({{{(....})),,},,.,....))}}.,}}}.||{{....((((((....)))))){((((((,,,(..{....,,),.),))))))}........})}}{{((({,...|||,((({{{|||,.........}}}}}))}|)}|||{{..........}}},....)))))})))))..........