Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0010300

Sequence Length

396 nt

GC Content

0.4394

AUAUGGACUCCAGUCAUAGUAUAACGCUUCAGCCUACUGCAAAUCCAAACACAGGUUUGGUGGAAGAUUUGGACAGGACAGGACCUCUUUCAAUGACAACGCAGCAGAGUAAUUCUCAGAGCUUCUCUACAUCACAUGAAGGCUUGGAAGAAGAUAAAGACCAUCCAACAACUUCUACUCUGACAUCAAGCAAUAGGAAUGAUGUCACAGGUGGAAGAAGAGACCCAAAUCAUUCUGAAGGCUCAACUACUUUACUGGAAGGUUAUACCUCUCAUUACCCACACACGAAGGAAAGCAGGACCUUCAUCCCAGUGACCUCAGCUAAGACUGGGUCCUUUGGAGUUACUGCAGUUACUGUUGGAGAUUCCAACUCUAAUGUCAAUCGUUCCUUAUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-91.6 kcal/mol

Ensemble Metrics

Free Energy: -99.29

Frequency: 0.0000

Diversity: 116.26

Structure Visualization

Structure Prediction

MFE Structure Prediction

(..(((((((((...((((((....((......((.((((....((((((....))))))(((((((...(..(......)..).)))))))........)))).))((((((((.(((((((((............))))..(((((.(...........).)))))...((((((((.((((((((..(.....)..))))))))..))))))))....((((((.......((((.((..........(((((((.((((...))))................(((((.........)))))...))))))))))))).......)))))))))))))))))))))...)))))))))))..))))..)((.(((............))).))

Thermodynamic Ensemble Prediction

{...((((.((((((.((((.....,{,..{{{({.({{(....((((((....)))))){(((((({{{(,.,......},.},))))))}........}}}},,{((,..,,|||,{(({{{|||,.........)}))}}||{||.|...........,.}}}}....((((((((.((((((((..(.....)..))))))))..))))))))..{,{,,|||.,||.,,|}|,|}}}},.......{(((((({((((,...|||.,......,.......|{{||.....,,},))))}...})))))).....)))).))))))))))}||((({,.|||{,.{{{{..((((({...))))))..}})),.},...,},,}.....}}