Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD7_0004000

Sequence Length

777 nt

GC Content

0.4556

CAUUCCCCGUCGGAGCCCUUUCUAGAGAAACCAGUGCCGGAUAUGACUCAGGUUAGUGGACCGAAUGCUCAGCUAGUGAAGAGUGAUGAUUACCUGCCAUCAAUAGAACAGCAGCCACAACAAAAGAAGAAGAAAAAGAAAAACAACCACAUUGUAGCAGAGGAUCCCAGUAAAGGUUUUGGUAAAGAUGACUUCCCUGGUGGGGUAGAUAACCAAGAACUAAAUAGGAACUCACUGGAUGGGUCCCAAGAAGAAAAAAAGAAAAAGAAAAGGUCAAAGGCAAAAAAAGACCCGAAGGAACCGAAAGAACCCAAGGAGAAAAAAGAGCCCAAGGAACCCAAGACCCCGAAAGCCCCUAAGAUUCCCAAAGAGCCAAAGGAAAAGAAAGCAAAAACUGCCACGCCAAAACCCAAAUCCAGCAAAAAGUCAAGUAAUAAGAAACCUGACUCAGAAGCAAGUGCUUUGAAGAAAAAGGUCAACAAGGGAAAAACAGAAGGUUCUGAAAAUUCAGACUUAGACAAAACACCCCCACCAUCUCCUCCUCCUGAAGAAGAUGAGGACCCAGGUGUUCAGAAGAGACGGUCCAGCAGACAGGUGAAGAGAAAGCGCUACACUGAAGACCUGGAGUUCAAGAUUUCUGAUGAGGAGGCAGAUGAUGCAGAUGCUGCUGGGAGGGAUUCCCCCUCCAACACCUCCCAGUCAGAACAGCAGGAAUCUGUUGAUGCAGAAGGCCCAGUGGUAGAAAAAAUUAUGAGCAGUCGUUCAGUAAAAAAGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-168.8 kcal/mol

Ensemble Metrics

Free Energy: -185.41

Frequency: 0.0000

Diversity: 182.73

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((......((((.((..((((....))))...)).))))..))).(((...(((.(((((.((.(((((((((.((......(((((.........))))).....))))).(((((........................((((.....))))....(((..(((......((.(((((((..........((((....))))......))))))).)).....))).))).((((((((((...........................((((...(((..........((...((...........))...))..........)))...((...))..)))).........(((..(.(((.....))).)..)))........(((.....))).........)))))..))))).....(((((.((........)).)))))..(((((....))))).........((((.....(((.........((((.((((....))))))))..........)))....((((((((((((....(((((.(..((((((((((.(((((...((.((.(((..((......))..).))...))))...))))).)))))).))))..).)))))...))))))).))))).((((....(((((((((((..((........))..)))))))).)))..((((((....)))))).))))...))))..)))))...........)))))).))))))).)))....).))

Thermodynamic Ensemble Prediction

(((,,{,.,{{((.,{..(({{....)}},,,.}}}}})),.}}}.{{,...(((.(((({,({.((((({(((,,(,....,(({{,.|},,{{{,|||||{{{{{.||||{((.,,........................{{{{.....}))).,,.(((..(((......,(,(((((((.....{,.{{{(((....)))),,..,.))))))}.))...,.))).))).({(({(((((.,.........................((((...,,,.......}}}|{...{{...,.......,},..||..........|}}...||..,}}..,.,},,....,,.{{{..,.{{{,....},}.,..,))........(((.....)))...,,,...)))},..)))}).....{((((.((........)).))))|{,(((((....)))))}..,.....,,},.....(((.........(((,{((((....))))))))..........})),,..((((((((((((....(((((.(..((((((((((.(((((...((.((.(((..({......))..}.}}...))))...))))).)))))).))))..}.)))))...))))))).))))).||,....}||||||((((({.....}}}}}}....}}|||},|,,,,..,.}}|}}..}))))))})))))..,|||..,})))...........)))))).))))))).)))....}.})