Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_DENND4C_0010100

Sequence Length

510 nt

GC Content

0.4137

GUAUAUGGAGCUGCCAUUCAGUUUUAUGAACCUUACUCUCGGGAACUUCUAUCAGAGAAACAGCUUAUGCACCUGGGCUUGUUGACGCCUGUGGAGAGAAAAAUGGUCUCCAAAUCCAUCAAUACAAACAAAUGCAUUUGUUUACUCUCACACUGGCCUUUUUUUGAAGCUUUUAGGAAAUUUCUUAUGUUUAUCUACAAACUUUCUGUGUCUGGACCACAUCCUCUUCCCAUUGAAAAGCACAUUUCACAUUUUAUGCAAAACAUCCCUUUUCCUUCACCACAAAGACCGAGAAUCCUUGUCCAGCUGUCAGUCCAUGAUGCAUUAAUAUUAUCACAGCCAGUUUCUACACCUUUACCACUAAGUGGAGCCAACUUUAGCACCUUGCUAAUGAAUCUGGGUCCUGAGAAUUGUGCAACACUGCUGCUCUUUGUUUUACUUGAGAGUAAAAUUCUGCUGCAUUCUCUUAGGCCAGCUGUCUUGACUGGGGUAGCUGAAGCUGUUGUAGCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-109 kcal/mol

Ensemble Metrics

Free Energy: -120.04

Frequency: 0.0000

Diversity: 168.65

Structure Visualization

Structure Prediction

MFE Structure Prediction

........((((((....((((((((...((((((...((((((.........((((((((((...(((((..((....((((((......((((((.........))))))......))))))....))..))))))))))).))))...((((((((((....))))....(((((....))))).((((......))))....(((((((((((.(((............(((((......)))))........((...(((....(((((..((........))..)))))....)))...)))))..))))).))))))..............))))))........((((((......))))))......((((((...)))))).....((((..(((((((...(((((.((....(((((((..........)))))))......)).)))))..)))))))))))...)))))).))))))...))))))))..))))))

Thermodynamic Ensemble Prediction

.,....,.((((((..,,((,,,,,,}}}|,,,,,,{((({((,....,,..,,}))|((((((({,{((({{(((({,,,,{((,({{.{(((((({....{{{{,,,,,,...})})......{(((((,....})))))).))))).}}|,|||{{,,....||||,...{((((,...}}}}},(({,....},},,,...,{{{(,{{((({................,((({.,....}}},,.......}},.,,|,,....|||||..,,........}|..|||,,..,,}))},,}},}},}))))).)})))},..........,.,,{{{{,{{{.....,,,,,(,,,...))))|,......((((({...}))))).)},.}))|,,(((((((...(((((.{{....(((((((.{,...,,..)))))))......)).)))))..))))))))|||||}}|||}},}})))),))}}))))))}}))))))