Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_DNAJC6_0011400

Sequence Length

355 nt

GC Content

0.4507

GUGACCAACACACAGAUAUUCCAGCUUCAGUUUCACACUGGAUUCAUACCACUGGACACAACAGUUUUAAAGUUCACCAAGCCUGAGUUAGAUGCAUGUGAUGUACCAGAAAAAUAUCCUCAGCUAUUUCAGGUGACACUGGAUGUAGAACUACAGCCCCAUGACAAAGUAAUAGACUUAACUCCACCAUGGGAACAUUACUGCACAAAAGAUGUCAAUCCCAGCAUCCUCUUCUCUUCUCACCAGGAACAUCAAGAUACGCUGGCCUUAGGAGGACAGGCUCCAAUAGAUAUCCCUCCAGACAACCCCAGGCAUUACGGACAAAGUGGUUUCUUUGCCUCUCUCUGUUGGCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-74.5 kcal/mol

Ensemble Metrics

Free Energy: -80.47

Frequency: 0.0001

Diversity: 54.86

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.(((((............(((((.............)))))........((((.......))))......((((.....(((((.......((((.(((((((.........(((((((((.((.....)).)))....))))))...........((((((....(((..........)))....)))))).))))))))))).....((((((....(((((....((((...((((.....))))....))))...))))).....((((......))))....))))))..............))))).....))))....))))).)((((((..........))))))

Thermodynamic Ensemble Prediction

(.(((({.,.....,....(((((.....,.......)))))........((((.......))))......((((.....(((((.{,..,.((((.(((((((.........{{{((((((.((.....)).)))....)))))),..........((((((....(((.,......}.)))....)))))).))))))))))),....((((((.,..(((((....((((...((({.....)))}....})))...))))).....(((({.....}}},....)}}}}},,,,,....,....))))).....))))...,))))).)((((((..........))))))