Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ERBB2IP_0006400

Sequence Length

364 nt

GC Content

0.3846

AAUGUUGGCUCAAUUAAGAAACAUCAGGGAGAUAAAUUCAACCCAGUGUGUCUAAAAAUGACUACAAAACGAAGUUUGUUUGUGCGGUUGGUACCAUGUCGCUGUCUACGAGGGGAAGAGGAGACUGUCACUACUCUUGAUUAUUCUCAUUGCAGCUUAGAACAAGUUCCGAAAGAGAUUUUUACUUUUGAAAAAACCUUGGAGGAACUCUAUUUAGAUGCUAAUCAGAUUGAAGAGCUUCCAAAGCAACUUUUUAACUGUCAGUCUUUACACAAACUGAGUUUGCCAGACAAUGAUUUAACAACGUUACCAGCAUCCAUUGCAAACCUUAUUAAUCUCAGGGAACUGGAUGUCAGCAAGAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-68.6 kcal/mol

Ensemble Metrics

Free Energy: -77.46

Frequency: 0.0000

Diversity: 113.54

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((((((...........((((..((..((.....))..))..))))(((.......)))...........((((((..(((..(((((((....((((.(((((....((.((((((((....((((.......))))..)))))...(((..(((((...((((((....(((.(((((.(....).))))).)))...))))))...))))).)))....(((.(((((((((((...))))...))))))))))(((((..........))))).))).))))))).))))..........)))))))...))).)))))).......(((.(((....)))))))))))))......

Thermodynamic Ensemble Prediction

..(((((((,{.....,{{.((((..((,.((.....))..)),.)))){||,......))}..,.....,,.((((((.,({(..(((((((,..{(({(,((({{..{{(({,{,,(((((...,.,....}}}}),,},.}))))...|||||{{(({...((((((..,,({(.(((((.{....},)))}}.)))...))))))...}||}|,||},.},|{{,{{(({{{({{|...}}},..,))))))}}))|||||,},....,,,|}}}}})))}}.))))}.))},........),)))))))...}}}.)))))).,,....(((.(((....)))))))))))))......