Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_FAF1_0010200

Sequence Length

377 nt

GC Content

0.4456

GAGAGAUUAAACAGAUUCUAGAAAAUGAACUUCAGAUACCUGUGUCCAAAAUGCUGUUAAAAGGCUGGAAGACGGGAGAUGUGGAAGACAGUACGGUCCUAAAAUCUCUACACUUGCCAAAAAACAACAGUCUUUAUGUCCUUACACCAGAUUUGCCACCACCUUCAUCAUCUAGUCAUGCUGGUGCCCUGCAGGAGUCAUUAAAUCAAAACUUCAUGCUGAUCAUCACCCACCGAGAAGUCCAGCGGGAGUACAACCUGAACUUCUCAGGAAGCAGUACUAUUCAAGAGGUAAAGAGAAAUGUGUAUGACCUUACAAGUAUCCCCGUUCGCCACCAAUUAUGGGAGGGCUGGCCAACUUCUGCUACAGACGACUCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-71.6 kcal/mol

Ensemble Metrics

Free Energy: -79.84

Frequency: 0.0000

Diversity: 123.94

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.......((((..(((.(((.......))))))...)))).........((((((.......((((((...((((((.(((..(((......))))))..))))))...))).)))......)))))))))(..(((.......((((...(((((((((((.......((((..((((.(((((((((.(((...............((((.((.((.........)).)).))))))).))))).))))..(((((.....))))).))))..)))).....))))).....((.((.((((......)))).)).))(((((............)))))..)).)))).....))))........)))..)

Thermodynamic Ensemble Prediction

{(({{{{...{{((.,(((.({{.......))}}))...)))},|,......(((({{....|||{(((((...((((((.{((..(((......)))}},..))))))...))).))}......}}}))))))|..(((.,{....((((.{{((((,,,((((,......((((..((((((((.,(,((((((((............|||||.||},|..},}}.....,,|{||{||.|{|}||}.,,.,..||}),})))))),)).))))..)))).....}}|||...,.{{.{{.((((......)))).}}.)}{{{{|,.,||.,,....,)))),})).)))).}}..)))).....}}.)))..}