Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_FAM114A2_0004700

Sequence Length

417 nt

GC Content

0.4652

CUGAUGUUCUAAUCAUGUCAGAUAAAGAUGAUAUUGAGACUCCACUGCUAACUGAAGCAGCCCCCAUCCUUGAAGAUGGAAACUGUGAGCCAGCCAAGAAUUCUGAGUCUGUUGACCAAGGUGCCAAACCAGAGAGUAAAUCAGAACCUGUAGUUUCCACUCGGAAAAGACCAGAGACCAAACCUUCCAGUGACCUUGAGACUUCAAAAGUUCUCCCUAUUCAGGAUAAUGUUUCCAAAGAUGUACCCCAGACCAGAUGGGGUUAUUGGGGGAGCUGGGGCAAGUCCAUACUCUCCUCAGCCUCGGCUACAGUAGCUACAGUAGGACAAGGCAUUUCAAAUGUCAUCGAGAAGGCAGAGACUUCCCUUGGAAUCCCUGGUCCCAGUGAAAUUUCAACUGAAGUCAAGUAUGUAGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-108.5 kcal/mol

Ensemble Metrics

Free Energy: -115.67

Frequency: 0.0000

Diversity: 130.51

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((..(((....((((((((........))))).))))))..))((((((((((.(((.....(((((......)))))..(((((.((((............((.(((....))))).(((.....)))...(((((....(((((.((.((((((((((.((((..................)))))))).....)))))).))...)))))...))))).(((.......)))...((((.((((((.......))))))))))..(((.(((((((..(((....)))..))))))))))))))))))).))).)))).((((.(((.(((((((..(((.((.........))))).....))))))).))).))))((((((....)).))))............))))))

Thermodynamic Ensemble Prediction

,{(,,{({,,..{{|(((({......,{||||||{||||,.{|,{((((,((((.(((.....(((((......)))))..(((((,{(((.........,,{((.(((....)))|,.(((.....)))..,({{{,...,{{{{{,{{.{{((((({{{.||{|......,,.........,}}}}}}}}.....||||||.}}..,)))))|,,|,.,,.||{.......}}}...,{{{.((((((.......)))))))}))))))||(((((((..(((....)))..)))))))})}))))))))).))).)))).||,|.,||.,||||||,}|||}||.....,,,,,,|||{{{..|||||||,}||{,,,,|||,||..}})))),,)}}}}}.......}})}))