Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_FNDC3B_0014800

Sequence Length

526 nt

GC Content

0.5057

GUGAUUGAAGAUAGUACUGGAGUCCGCCGGGUGGUGGUCACACCCCAGUCUCCUGAGUGUUAUCCCCCAAGCUACCCCUCAGCCAUGUCUCCAACCCAUCAUCUCCCUCCCUAUCUGACUCACCAUCCACAUUUUAUUCAUAACUCACACACGGCUUACUACCCACCUGUUACCGGACCUGGAGAUAUGCCGCCUCAGUUUUUUCCCCAGCAUCAUCUUCCCCACACAAUAUAUGGUGAGCAAGAAAUUAUACCAUUUUAUGGAAUGUCAACCUACAUCACCCGAGAAGACCAGUACAGCAAGCCUCCGCACAAAAAACUGAAAGACCGCCAGAUCGAUCGCCAGAACCGCCUCAACAGCCCUCCUUCUUCUAUCUACAAAAGCAGCUGCACAACAGUAUACAAUGGCUAUGGGAAGGGCCAUAGUGGUGGAAGUGGCGGAGGCGGCAGCGGUAGUGGUCCCGGAAUUAAGAAAACAGAGCGACGAGCAAGAAGCAGCCCAAAGUCGAAUGAUUCAGACUUGCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-117 kcal/mol

Ensemble Metrics

Free Energy: -127.65

Frequency: 0.0000

Diversity: 120.72

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((....((((((....((((......((((((((....)))).((.((....)).))...........(((.......)))..........)))).....))))....))))))...))))(..............((((.(((.((..(((...((.........))..)))....))))).)))).(((.((.(((((((.....((.(((((.................)))))))...........((((...)))).((((......))))...(((.(..(((((.(((.((..((((((((((......(((...((.((......)).))..)))..(((((......((((((((....((((...........((((.....)))).....))))....))).)))))......)))))..)).))))))))....)).))).))))))))).....))))))).)))))....((.....)).((...((((((((...))).)))))))..)

Thermodynamic Ensemble Prediction

((((....((((((....((((...,,.(((((({((,.{{{|,.(({....}}),}))}.,.,......|||},,.,.,})}...}.,,,,,,}}}.....))}}....))))))...))))(..............,,{,.{{{.....(((,..{{...,.....|}..})),...}}))).))|)|{({(((.(((((((.....{{.{{{((.................))))))}..},.......((({...}))).{{({......})}}...(((.{..(((((.(((.((..((((((((,{......{((...((.({...,..)}.))..||}..(((((.{....((((((((....((((...........((((.....)))).....})))....)))}}))))....}.)))))..,))))))))))....)).))).)))))}))).....})))))).)))|}.,,.{{.....}}.||...((((({{,...,)}.)))))},..)