Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HDAC9_0011300

Sequence Length

642 nt

GC Content

0.4860

UGGAUGUGAAGUCAGAAGUUCCUGUGGGCCUGGAGCCCAUCUCACCUUUAGACCUAAGGACAGACCUCAGGAUGAUGAUGCCCGUGGUGGACCCUGUUGUCCGUGAGAAGCAAUUGCAGCAGGAAUUACUUCUUAUCCAGCAGCAGCAACAAAUCCAGAAGCAGCUUCUGAUAGCAGAGUUUCAGAAACAGCAUGAGAACUUGACACGGCAGCACCAGGCUCAGCUUCAGGAGCAUAUCAAGUUGCAACAGGAACUUCUAGCCAUAAAACAGCAACAAGAACUCCUAGAAAAGGAGCAGAAACUGGAGCAGCAGAGGCAAGAACAGGAAGUAGAGAGGCAUCGCAGAGAACAGCAGCUUCCUCCUCUCAGAGGCAAAGAUAGAGGACGAGAAAGGGCAGUGGCAAGUACAGAAGUAAAGCAGAAGCUUCAAGAGUUCCUACUGAGUAAAUCAGCAACGAAAGACACUCCAACUAAUGGAAAAAAUCAUUCCGUGAGCCGCCAUCCCAAGCUCUGGUACACGGCUGCCCACCACACAUCAUUGGAUCAAAGCUCUCCACCCCUUAGUGGAACAUCUCCAUCCUACAAGUACACAUUACCAGGAGCACAAGAUGCAAAGGAUGAUUUCCCCCUUCGAAAAACUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-160.6 kcal/mol

Ensemble Metrics

Free Energy: -171.99

Frequency: 0.0000

Diversity: 191.31

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((..(.(((((((.....((((((((((.....))))))............(((.(((.....))).)))..(((((((...(((((((....(((((...((((((((.((((.(....).)))).)))))))).)))))(((((.......(((((.((.((((((((..(..((((((((.........)))).))))..)...((.((.((((..((.((((((((((....((..(((((.........................)))))..)).)))))......))))).))..)))).)).)).((((.......(((((((.((......))((........)).)))))))))))))))))))...................(((..(((((.......(((((.........)))))..((((((...((((.....))))....)).....))))......((((((.......))))))..)))))...)))..)))))))......)))))))))))).)))))))............(((((......))))).(((((...((((....(((.....))).)))).....)))))...))))))))))))..)).((......))

Thermodynamic Ensemble Prediction

{{{.,(,({{(({(,,,{{((((((((((,,,,.||}}}|,,...,,,....(((.(((.....))).))).,|{{{{((...(((((((...{(((((,..((((((((.((((.(....).)))).)))))))).}})))||||{.......{((({{({.{||||||,..,,.{{((((((,......,.))}}},||||.},,,||.||.||||},||.(({{({{(((....{{..{{{||..,,}}},}}},,.,},,,...,,,|},}}..}}.|||||.....,))))}.},..)))}.|}.|}.,.,|},,,...,((((({.,.{,,{{.||((........)).))))))|(((({,,...........})})},.......(((,,(({({..,{{{.{{{{{.,,{{....)))),..{{(({{...((((.....))))....},..,..}}}}......((((((.......)))))),|}|,}}...}}}..))))))),,,.,.)))))))}}}}}.}}}}}})||......,,,,(((((......))))).{{{{{...{(({....{{,.....},,.)))),,...}))))...,|||}}}}}))}..}}}},.....,})