Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HDAC9_0018500

Sequence Length

302 nt

GC Content

0.4768

GUGAUGACUCUCAAAAGUUUUUUUCCUCAUUACCUUGUGGUGGACUUGGGGUGGACAGUGACACCAUUUGGAAUGAGCUACACUCGUCCGGUGCUGCACGCAUGGCUGUUGGCUGUGUCAUCGAGCUGGCUUCCAAAGUGGCCUCAGGAGAGCUGAAGAAUGGGUUUGCUGUUGUGAGGCCCCCUGGCCAUCACGCUGAAGAAUCCACAGCCAUGGGGUUCUGCUUUUUUAAUUCAGUUGCAAUUACCGCCAAAUACUUGAGAGACCAACUAAAUAUAAGCAAGAUAUUGAUUGUAGAUCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-84.4 kcal/mol

Ensemble Metrics

Free Energy: -92.1

Frequency: 0.0000

Diversity: 75.87

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.....(((((((..((((................(((((((.((.((((((..(((...((((....(((.((((.....))))))))))))))..))).(((..(((((((.........)))))))..)))....(((((((.((.(((..............))).)).)))))))))).)))))))))((((((((((((.((....)))))))))...........))))).((.......)).))))..)))))))))((......(((((.(((....))).)))))....))

Thermodynamic Ensemble Prediction

((.....(((((((..((,,....((((((({((..,,))})}...}}}||,||.,,({{.{{|(|,..((||((((.....))))))))))).}}},|.{(((((((,{((.,...(((.((.(.(((({......(.(((((((.((.(((.{{........}}.))).)).)))))))}..,))))).}.)).))).....))))))))))},|{{..(((...............)))...))).}}}}},..))))))),},,}}{{..(((({.(((....))).}))))....))