Sequence Details

BLAST PRIMER
Symbol
hsa_HIF1A_0009300
Sequence Length
236 nt
GC Content
0.3814
AACUACAGUUCCUGAGGAAGAACUAAAUCCAAAGAUACUAGCUUUGCAGAAUGCUCAGAGAAAGCGAAAAAUGGAACAUGAUGGUUCACUUUUUCAAGCAGUAGGAAUUGGAACAUUAUUACAGCAGCCAGACGAUCAUGCAGCUACUACAUCACUUUCUUGGAAACGUGUAAAAGGAUGCAAAUCUAGUGAACAGAAUGGAAUGGAGCAAAAGACAAUUAUUUUAAUACCCUCUG

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-35.3 kcal/mol
Ensemble Metrics
Free Energy: -40.24
Frequency: 0.0003
Diversity: 58.14
Structure Visualization
Structure Prediction
MFE Structure Prediction
(((....)))(..((((..(..(((..((((....((((((.((((((...((((..(((((((.(((..((........))..))).))))))).))))((((.(((......))).))))(((.((..((...))..)).))).((....(((((((...)))).)))....))..)))))).)))))).......)))).)))..)((((........)))).....)))).)
Thermodynamic Ensemble Prediction
(((....)))(..((((.....{{,..((((....((((((.((((((...((((..(((((((.(((..((........))..))).))))))).)))}((({.{{{.,....}}}.}}}}{((.((..{,...}}.,)).)))..{.,,{{,{{{{{...))}}.))),,..,,..)))))).)))))).......)))}.}}}..,.,,,........}}}}.....)))).)
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