Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HOMER1_0001100

Sequence Length

349 nt

GC Content

0.4241

UUCAGCAAUCAGCAAACAUUGGGAGGCUGAACUGGCUACCCUCAAAGGAAAUAAUGCCAAACUCACUGCAGCCCUGCUGGAGUCCACUGCCAAUGUGAAACAAUGGAAACAGCAACUUGCUGCCUAUCAAGAGGAAGCAGAACGUCUGCACAAGCGGGUGACUGAACUUGAAUGUGUUAGUAGCCAAGCAAAUGCAGUACAUACUCAUAAGACAGAAUUAAAUCAGACAAUACAAGAACUGGAAGAGACACUGAAACUGAAGGAAGAGGAAAUAGAAAGGUUAAAACAAGAAAUUGAUAAUGCCAGAGAACUACAAGAACAGAGGGAUUCUUUGACUCAGAAACUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-64.8 kcal/mol

Ensemble Metrics

Free Energy: -72.56

Frequency: 0.0000

Diversity: 77.04

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((..((((......))))...))))))(((.(((.((((...((........))......(((.((((...)))).)))...((((((.(((...))).)))...)))....(((((.(((......))).)))))...(((((((...((.(((.(((((((......)).))))).)))..))...))))).))....(((.....(((.......((((............))))........)))....))).....))))...)))...(((.....(((....))).....)))...............(((((.....)))))............)))

Thermodynamic Ensemble Prediction

((((((..(((,......})))...))))))(((.{{..((((...((........))......{((.((((...)))).))).,,,{{(((.{({...})).)))...|||{,...||||}(((......))).}))||...(((((((...((.(((.(((((((......)}.))))).)))..))...))))).))...,{{......,{{.......{(((............})),........}}}...||,..,...}}}}.........(((.....(((....))).....))).,.,..,,.......,,|||},.}}))))}.,}},,......)))