Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HOMER1_0001200

Sequence Length

489 nt

GC Content

0.4397

GAAUCCGCAGGCGGGGAUCUUCAGUCUCCUUUAACACCGGAAAGUAUCAACGGGACAGAUGAUGAAAGAACACCUGAUGUGACACAGAACUCAGAGCCAAGGGCUGAACCAACUCAGAAUGCAUUGCCAUUUUCACAUAGUUCAGCAAUCAGCAAACAUUGGGAGGCUGAACUGGCUACCCUCAAAGGAAAUAAUGCCAAACUCACUGCAGCCCUGCUGGAGUCCACUGCCAAUGUGAAACAAUGGAAACAGCAACUUGCUGCCUAUCAAGAGGAAGCAGAACGUCUGCACAAGCGGGUGACUGAACUUGAAUGUGUUAGUAGCCAAGCAAAUGCAGUACAUACUCAUAAGACAGAAUUAAAUCAGACAAUACAAGAACUGGAAGAGACACUGAAACUGAAGGAAGAGGAAAUAGAAAGGUUAAAACAAGAAAUUGAUAAUGCCAGAGAACUACAAGAACAGAGGGAUUCUUUGACUCAGAAACUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-97.3 kcal/mol

Ensemble Metrics

Free Energy: -108.47

Frequency: 0.0000

Diversity: 143.69

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((((.(((((((...(((((((((((......(((...........)))....................((((.((........)))))).((..(..(((((((......((((((......))))))......)))))))..)..)).......))))))))))).((((...(((...))).......)))).....(((.((((...)))).))))).)))))..................(((((...)))))(((......)))..(((((...)))))....))))))..(((....(((.(((((..(((..........)))...))))).))).....(((.......((((............))))........)))...((((.(..((((((........(((.....(((....))).....)))......((........)).....))))))..)))))......)))

Thermodynamic Ensemble Prediction

{,((((,(.{{(((({|,,(((((({((((......(((.......,,..|}}....,.,},},.........((((.((........)))))).((..,.|{((({,,......{{{{(({....,||||||,,,,,,|||||||..{{,|}.....,}))}},))))))}|(((...{{{...,}).......))),.....,({.((({...)))).)))}}.}}}}}.,|||,,.,.,,}}}...{{|||..,||||,(((......))).,||||,..{|||||{...{(,(({.{((({{(......}},}}})}.}))..))...}))}}.}}...,||......,,{.......{{{{............}))}..,.,...))}...{{{..{..,{||..........(((.....(((....))).....)))......{{.........,.,},,)))}}},.,}},,......}))