Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HOMER1_0001300

Sequence Length

582 nt

GC Content

0.4313

UUUGCAGAAAAGUUUCAGGAAUUUAAAGAAGCUGCUCGACUAGCAAAGGAAAAAUCACAAGAGAAGAUGGAACUUACCAGUACACCUUCACAGGAAUCCGCAGGCGGGGAUCUUCAGUCUCCUUUAACACCGGAAAGUAUCAACGGGACAGAUGAUGAAAGAACACCUGAUGUGACACAGAACUCAGAGCCAAGGGCUGAACCAACUCAGAAUGCAUUGCCAUUUUCACAUAGUUCAGCAAUCAGCAAACAUUGGGAGGCUGAACUGGCUACCCUCAAAGGAAAUAAUGCCAAACUCACUGCAGCCCUGCUGGAGUCCACUGCCAAUGUGAAACAAUGGAAACAGCAACUUGCUGCCUAUCAAGAGGAAGCAGAACGUCUGCACAAGCGGGUGACUGAACUUGAAUGUGUUAGUAGCCAAGCAAAUGCAGUACAUACUCAUAAGACAGAAUUAAAUCAGACAAUACAAGAACUGGAAGAGACACUGAAACUGAAGGAAGAGGAAAUAGAAAGGUUAAAACAAGAAAUUGAUAAUGCCAGAGAACUACAAGAACAGAGGGAUUCUUUGACUCAGAAACUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-119.4 kcal/mol

Ensemble Metrics

Free Energy: -129.88

Frequency: 0.0000

Diversity: 129.23

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.(((.....((((((............((((((..(((((((............((((.((((.((..(((....))).)).)))).(((..((((((.(((((((...(((((((((((......(((...........)))....................((((.((........)))))).((..(..(((((((......((((((......))))))......)))))))..)..)).......))))))))))).((((...(((...))).......)))).....(((.((((...)))).))))).)))))..................(((((...)))))(((......)))..(((((...)))))....))))))..)))..))))....))))))))))..)))..(((.(((....))))))..............................))))))......))))))(((.((...(((..........(((.....(((....))).....)))...............(((((.....))))).))).....)).)))

Thermodynamic Ensemble Prediction

(((.(((...,,(((({{.........,,,||{(((..,{{{||,.........,|......((((.((..{({....}}}.}}.)))).(((..((((((.((((((({.,(((((((((({......{{{.......,,,.|}}....,.,},}}.........((((.((........)))))).{{..{,,((((({{......{(((((,.....)))))}......|||||||..|,.}}......,))))})))))),{(((...{{{...,}).......)))}......{{.|{||,,,)))),))))).)))))..,{,...,,,.......(((({...}))))(((......)))..(((((...)))))....))))))..)))..,,}},..}}))}}}||}}...||..,{|,{{{....}))}},......,,......,,..............))))}},.....))))))(((.((...(((..........(((.....(((....))).....))),,,,,,,,.......,,{,{|..})))))}.))).....)).)))