Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HOMER1_0003300

Sequence Length

233 nt

GC Content

0.4421

UUUGCAGAAAAGUUUCAGGAAUUUAAAGAAGCUGCUCGACUAGCAAAGGAAAAAUCACAAGAGAAGAUGGAACUUACCAGUACACCUUCACAGGAAUCCGCAGGCGGGGAUCUUCAGUCUCCUUUAACACCGGAAAGUAUCAACGGGACAGAUGAUGAAAGAACACCUGAUGUGACACAGAACUCAGAGCCAAGGGCUGAACCAACUCAGAAUGCAUUGCCAUUUUCACAUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-33.2 kcal/mol

Ensemble Metrics

Free Energy: -39.59

Frequency: 0.0000

Diversity: 71.5

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(..((..((((((...........))))))..))..).))(..........((....))((((((((.(((....)))...(((....)))..(((...(((((((((.....)))))).......(((...........)))....................((((.((........)))))).)))..)))((((......)))).........)))))))).....)

Thermodynamic Ensemble Prediction

((,({,({..((((((...........)))))),,},,,|,|}|...,{,....||....,.(((({(({.{{{....}}}.,,,||,,..,|}..{{({{,..{|{|||{{{{..||||||{......(((...........))),..,}..}}},.,,,,....((((.((,.......}}}}}},{{{..,))}|{{......}}}}..,|....,})))))))...,,)