Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HOMER1_0003400

Sequence Length

365 nt

GC Content

0.4356

GCAAUAAUAAAUAGUACCAUCACCCCAAACAUGACAUUUACUAAAACAUCUCAGAAGUUUGGCCAGUGGGCUGAUAGCCGGGCAAACACCGUUUAUGGAUUGGGAUUCUCCUCUGAGCAUCAUCUUUCGAAAUUUGCAGAAAAGUUUCAGGAAUUUAAAGAAGCUGCUCGACUAGCAAAGGAAAAAUCACAAGAGAAGAUGGAACUUACCAGUACACCUUCACAGGAAUCCGCAGGCGGGGAUCUUCAGUCUCCUUUAACACCGGAAAGUAUCAACGGGACAGAUGAUGAAAGAACACCUGAUGUGACACAGAACUCAGAGCCAAGGGCUGAACCAACUCAGAAUGCAUUGCCAUUUUCACAUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-71.4 kcal/mol

Ensemble Metrics

Free Energy: -78.32

Frequency: 0.0000

Diversity: 90.32

Structure Visualization

Structure Prediction

MFE Structure Prediction

((..................(((.((((((.(((................)))...))))))...)))((((...))))((.......))))(((((((.(((.(......((((((((((((((.(((((((((......)))))))..............((((......))))((((((............((((.((..(((....))).)).))))..((((.(((.(....).))))))).....))))))....(((...........))))).)))))))).........((((.((........))))))((((...)))).......))))))......).)))...)).)))))

Thermodynamic Ensemble Prediction

(((((.......,{,....,,,.,((({,(,{({....,.,.......,.,,,,..|||||}{{.,,,((((...})))||.},},}.|}}.}}}}},.,}|||....,,|((((((((((((((.(((((((((......))))))).,,,.......,,.({({,,....}))){{{(((....,,....,.((((.((..(({....))).)).))))...{{{,(((.{....),)}))})),.,,.))))},....(((...........))))).)))))))).........((((.((........)))))){(((...)))).......)))))}....)))))(...........)