Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_HOMER1_0004200

Sequence Length

382 nt

GC Content

0.4136

GGAACAACCUAUCUUCAGCACUCGAGCUCAUGUCUUCCAAAUUGACCCAAACACAAAGAAGAACUGGGUACCCACCAGCAAGCAUGCAGUUACUGUGUCUUAUUUCUAUGACAGCACAAGAAAUGUGUAUAGGAUAAUCAGUUUAGAUGGCUCAAAGGCAAUAAUAAAUAGUACCAUCACCCCAAACAUGACAUUUACUAAAACAUCUCAGAAGUUUGGCCAGUGGGCUGAUAGCCGGGCAAACACCGUUUAUGGAUUGGGAUUCUCCUCUGAGCAUCAUCUUUCGAAAUUUGCAGAAAAGUUUCAGGAAUUUAAAGAAGCUGCUCGACUAGCAAAGGAAAAAUCACAAGAGAAGAUGGAACUUACCAGUACACCUUCACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-69.7 kcal/mol

Ensemble Metrics

Free Energy: -78.33

Frequency: 0.0000

Diversity: 128.14

Structure Visualization

Structure Prediction

MFE Structure Prediction

(......)((.((((..((..((((((.....((((((......(((((...............)))))........(((....)))....((((((((((((..........(((((.....)))))))))))))..))))..((((((((((.(((....(((...((((.(((((((.((((((.(((................)))...))))))...)))((((...))))((.......))....))))))))..)))..))).)))))..)))))...(((((((......))))))).)))......)))....))))))...))..))))............((((.((..(((....))).)).))))..))

Thermodynamic Ensemble Prediction

(......,((((((((.(({,,,{((({,,,{{(((,.....,,((({{...........,...|}|}}.....,,.|,|,|}})),}}}}.{{||||{{{({,,{{,{....(((((.....)))))))))))},..}}}},.{(((((((((.(((..........,,{{.,,,{{,,,((((,(,(({....,.,.......,.,,,,..|||||}{{.,,,((({...})))||.,,,,,.}},.,,))),.}))}},,,.,))).})))},.},|||{{{(((((((......))))))).})),....,})).}.})))))}.,.)}..,}}}....,|......))))))))..,,..}{.||....,,..}},)