Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ITCH_0006600

Sequence Length

405 nt

GC Content

0.3901

UCAUCUCAGCAAAACUUAAGGAAAAUAAGAAGAAUUGGUUUGGACCAAGUCCUUACGUAGAGGUCACAGUAGAUGGACAGUCAAAGAAGACAGAAAAAUGCAACAACACAAACAGUCCCAAGUGGAAGCAACCCCUUACAGUUAUCGUUACCCCUGUGAGUAAAUUACAUUUUCGUGUGUGGAGUCACCAGACACUGAAAUCUGAUGUUUUGUUGGGAACUGCUGCAUUAGAUAUUUAUGAAACAUUAAAGUCAAACAAUAUGAAACUUGAAGAAGUAGUUGUGACUUUGCAGCUUGGAGGUGACAAAGAGCCAACAGAGACAAUAGGAGACUUGUCAAUUUGUCUUGAUGGGCUACAGUUAGAGUCUGAAGUUGUUACCAAUGGUGAAACUACAUGUUCAGAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-85.8 kcal/mol

Ensemble Metrics

Free Energy: -93.48

Frequency: 0.0000

Diversity: 101.59

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.((((((((((((...................(((((....)))))((((((((............))))..)))).(((......))).......(((.....(((............)))...)))....(((((((............)))))))...((((.(((((.((((.(((.....))).)))).))))).))))))))))))))))...((((((.....................(((((..(((((.....((((....)))).)))))))))))))))).......((((....((((....(((((((...((......))...)))))))....))))...)))))).((((((..(((((((...)))).....)))..))))))..

Thermodynamic Ensemble Prediction

(({((((((({,,{(.{,,{,,............{((((....})))}||||||||{{.,..{{{,{{|,,..,)))).(((......)))......,(((,....,.,...,,{{{{{{,,,}{{,||,....(((((((.,,....,,...)))))))...,{{{.{{(((,((((.(((.....))).)))).))))).)}}}))))),)))))}.}}|{||||},.,,,.,,,,,,...,..,|{{{((,.,{{{{.....((((....)))).})))))))))))}}))|.,}},,|||{....((((....(((((((...((......))...)))))))....))))...},,,,,.{(((((,,({(((((...)))),....,}}..))))))..