Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ITCH_0007700

Sequence Length

263 nt

GC Content

0.3802

UAUCGUUACCCCUGUGAGUAAAUUACAUUUUCGUGUGUGGAGUCACCAGACACUGAAAUCUGAUGUUUUGUUGGGAACUGCUGCAUUAGAUAUUUAUGAAACAUUAAAGUCAAACAAUAUGAAACUUGAAGAAGUAGUUGUGACUUUGCAGCUUGGAGGUGACAAAGAGCCAACAGAGACAAUAGGAGACUUGUCAAUUUGUCUUGAUGGGCUACAGUUAGAGUCUGAAGUUGUUACCAAUGGUGAAACUACAUGUUCAGAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-60 kcal/mol

Ensemble Metrics

Free Energy: -64.61

Frequency: 0.0006

Diversity: 38.6

Structure Visualization

Structure Prediction

MFE Structure Prediction

....(((((((((((((.....)))))..(((((((.(((.....))).)))).)))(((((((((...((.(....).)).))))))))).............(((((((..(((((.....((((....)))).))))))))))))......)).))))))....((((....(((((((...((......))...)))))))....))))..........((((((..(((((((...)))).....)))..))))))..

Thermodynamic Ensemble Prediction

....(((((((((((((.....)))))..(({((((.(((.....))).)))).)))(((((((((...((.,...,).}}.))))))))).............{{{{{((,.,{{{{.....((((....)))),|||||}}}}})),,},,.)).))))))....((((....(((((((...((......))...)))))))....))))..........((((((,,(((((((...)))),....,))..))))))..