Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_MACF1_0028400

Sequence Length

360 nt

GC Content

0.4694

GACUAUGAAUUGCAACUGAUGACAUACAAGGCCUUUGUGGAAUCGCAGCAGAAAUCCCCUGGCAAGCGCCGUCGCAUGCUUUCCUCUUCAGAUGCCAUCACUCAAGAGUUCAUGGACUUAAGGACUCGCUACACGGCAUUGGUGACUUUAACAACUCAGCACGUGAAAUACAUCAGUGAUGCACUCCGGCGUCUGGAGGAGGAGGAGAAAGUGGUAGAAGAGGAGAAACAAGAACAUGUGGAGAAGGUUAAAGAACUUUUGGGCUGGGUGUCUACCCUAGCGAGGAAUACACAAGGAAAAGCUACCUCAUCCGAGACCAAAGAAUCAACAGACAUUGAAAAAGCUAUUUUGGAACAGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-79.8 kcal/mol

Ensemble Metrics

Free Energy: -87.7

Frequency: 0.0000

Diversity: 97.17

Structure Visualization

Structure Prediction

MFE Structure Prediction

.........((((..(((.(((..(((((.....)))))...))))))...........((((....))))(((((((.((((((((((...((((((..(((..((((((..........))))))....((((((...(((..........)))..)).)))).....((((...))))..((((((...))))))......)))...))))))))))))))))........))))))).(((((((....)))))))..(((((((....)))).)))((((...................)))).(((((((........((((......))))........)))))))...))))

Thermodynamic Ensemble Prediction

{....,...{(((..,{(,{,.{,{{{{,,...||}}}}..,}}},,},}}...,,,,{{(((,.,,}}}.,{||{|||((((((((((...((((((,.(((..((((((.{,....,,.))))))....{{{{{{.,{({({.......,.,},.,}}.}))},....{{||},})})),.((((((...)))))),.,},}}})...}))))))))))))))}........}})))},.(((((((....)))))))..(((((({....,))),)))((((...................)))).(((((((........((((......))))........)))))))...}}))