Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_NF1_0030500

Sequence Length

465 nt

GC Content

0.4237

GAUGAACUAGCUCGAGUUCUGGUUACUCUGUUUGAUUCUCGGCAUUUACUCUACCAACUGCUCUGGAACAUGUUUUCUAAAGAAGUAGAAUUGGCAGACUCCAUGCAGACUCUCUUCCGAGGCAACAGCUUGGCCAGUAAAAUAAUGACAUUCUGUUUCAAGGUAUAUGGUGCUACCUAUCUACAAAAACUCCUGGAUCCUUUAUUACGAAUUGUGAUCACAUCCUCUGAUUGGCAACAUGUUAGCUUUGAAGUGGAUCCUACCAGGUUAGAACCAUCAGAGAGCCUUGAGGAAAACCAGCGGAACCUCCUUCAGAUGACUGAAAAGUUCUUCCAUGCCAUCAUCAGUUCCUCCUCAGAAUUCCCCCCUCAACUUCGAAGUGUGUGCCACUGUUUAUACCAGGCAACUUGCCACUCCCUACUGAAUAAAGCUACAGUAAAAGAAAAAAAGGAAAACAAAAAAUCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-88.1 kcal/mol

Ensemble Metrics

Free Energy: -99.07

Frequency: 0.0000

Diversity: 114.45

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((((......)))))((((((..(((((.(..((((((...............((((..((((...(((((((((......)))))..))))...)))).))))........))))))))))))..)))))).................(((....(((((........)))))....))).........((((.....(((((.....)))))...))))))(((((((((.(((....(((((((((((((.......(((...((((.....((..((...((((((.......(((...)))(((((....)))))...))))))...))..))....))))..)))......))).......)))))))))))))))))..(((((...((.((((...))))......(((((..........)))))...........)).)))))...)))))

Thermodynamic Ensemble Prediction

((.(((((......}}}}|((((((..((((({(..{((((({{{....{{{.{{{,(((({{((((,..,,,.||||{.,}..}))),,,})),)}}.},,)}))}}........}))))}))))))..))))))}.........,,.....|||....(((((........)))))....}},.....,,..((((.....(((((.....)))))...))))))(((((((({,(((....((((((((((((.,,,,.,.,(((....}}}....,.|||}}|{(((((......,.(((({.,..{((((....))))}..},,,},,,..},...,....}}}},))))}}}..,,.........))))))))))))))))),.{(({{...{{.((({...))))......(((((..........)))))...........)).}}})}...}))))